Final Paper Topics

MATLAB Chaos and Fractals Codes

• accx.m
• accy.m
• asteroidchaos.m
• barnsley.m
• basins.m
• bifs.m
• bifs1.m
• cantor.m
• chaoticcalc.m
• ClassicalFractals.m
• dla.m
• dlacu5.m
• dlafix1.m
• fern.m
• fern1.m
• fire1.m
• fixpt.m
• fract1.m
• fract2.m
• FractalFern.m
• FraktalT3D.m
• ifs1.m
• ifs2.m
• loglyap.m
• logmap1.m
• logmapall.m
• logmapall28.m
• logmapblow.m
• logsen.m
• lorenz0.m
• lorenz4.m
• mandelbrot1.m
• nlo_1_mult_nl.m
• nlo_1_mult.m
• nlo_1_mult_1.m
• nlo_1_mult_2.m
• nlo_1_mult_2a.m
• nlo_1_mult_3.m
• nlo_1.m
• nlo_11.m
• nlo_12.m
• nlo_13.m
• nlo_13a.m
• osc1_lin.m
• osc1_nonlin.m
• osc1.m
• perc1.m
• perc2.m
• perc3.m
• percRG.m
• phsp.m
• phsppoin.m
• pred2.m
• pred4.m
• pred5.m
• pred6.m
• quadplot1.m
• returnmap.m
• ring_map_multi.m
• ring_map_multi_watch.m
• rkf2.m
• rkf4.m
• rkf5.m
• rkf6.m
• rkg2.m
• rkg4.m
• rkg5.m
• rkg6.m
• root3.m
• root3zoomunix.m
• rootthree.m
• rosc.m
• sierpinski.m
• solsyschaos.m
• solsyschaos1.m
• stepvect.m
• three.m

MATLAB/F95 Sandpile Codes

• avalplot.m
• avalplot64.m
• sand.m
• sand1.m
• sandcol.m
• sandpilesm.f90
• test64.f90

NetLogo Software Site

Evolution Simulation Codes

• baksnep.m
• dante.m
• dante1.m
• dante2.m
• dante3.m
• dante4.m
• dante5.m
• dante6.m
• evo.m
• evo1.m
• evo2.m
• evo3.m
• evo4.m
• life2.m - Game of Life

Class DEMO URLs

• Water Wheel Experiment 1
• Water Wheel Experiment 2
• Water Wheel Simulation
• Bak-Sneppen
• Pendulum 1
• Pendulum 2
• Double Pendulum
• Chaotic Pendulum
• 2 Pendula
• Finding Order in Chaos
• Lorenz Map
• URLs (text file)

Box Counting Program UNIX (ZIP file)

• fdc.zip

Images from Class (ZIP file)

• images.zip

Macintosh Avida Program - GUI

• Avida Program - ZIP file of .dmg file

Unix Avida

• avida-2.12.3-mac.zip (MAC UNIX binaries)
• avida-2.12.3-src.zip (Source UNIX,LINUX,MAC)
• Avida V2.6.2(HTML pages) (UNIX) Docs
• Avida V2.6.2 PDF (UNIX) Docs
• Avida - Speciation in Digital Organisms
• Avida: A Software Platform for Research in Computational Evolutionary Biology

Game of Life

• Movie
• App + code
• Lots of resources
• Conway's Game of Life.zip - APP
• Game of Life.zip - APP
• golly-2.3-mac.zip - APP + Examples
• gameoflife.nb.zip - Mathematica Notebook
• AProbabilisticForestFireModel.cdf.zip - Mathematica CDF
• GarbageCollectionByAnts.cdf.zip - Mathematica CDF
• RealTimeSimulationOfTheGameOfLife.cdf.zip - Mathematica CDF
• VisualizingConwaysGameOfLife.cdf.zip - Mathematica CDF